Jyoti Das, Manisha Datta, Srikanth Pippadpally, Bhavika Jethani, Surya Bansi Singh, Avinash Kshirsagar, Akankhya Jena, Vimlesh Kumar, Amitabha Majumdar, and Deepa Subramanyam*. Pathogenic mutations in clathrin heavy chain disrupt synapse architecture and learning in Drosophila. iScience, June, 2026. DOI: 10.1016/j.isci.2026.116317.
Mahak Tiwari, Mihir Dingankar, Jyoti Das, Sreelekshmi SR, Apurv Solanki and Deepa Subramanyam*. CLCa mediates a novel cross-talk between Wnt secretion and actin organization. Life Science Alliance, May, 2025. DOI:10.2.6508/lsa.202402962.
Surabhi Sharma, Jyoti Das and Deepa Subramanyam*. Traffic flow and signals: regulating the movement within cells. Current Opinion in Cell Biology, 2025. 94 :
102518. DOI: 10.1016/j.ceb.2025.102518.
Surya Bansi Singh, Shatruhan Singh Rajput, Aditya Sharma, Sujal Kataria, Priyanka Dutta, Vaishnavi Ananthanarayanan, Amitabha Nandi, Shivprasad Patil, Amitabha Majumdar and Deepa Subramanyam*. Pathogenic Huntingtin aggregates alter actin organization and cellular stiffness resulting in stalled clathrin mediated endocytosis. eLife, 2024; 13:e98363. https://doi.org/10.7554/eLife.98363.
Shatruhan S. Rajput, Surya Bansi Singh, Deepa Subramanyam* and Shivprasad Patil*. Soft glassy rheology of single cells with pathogenic aggregates. Soft Matter, 2024; https://doi.org/10.1039/D4SM00595C.
Ridim D. Mote, Mahak Tiwari, Narayana Yadavalli, Raghav Rajan and Deepa Subramanyam*. A high-throughput screen in mESCs to identify the cross-talk between signalling, endocytosis, and pluripotency. Cell Biol. Intl., 2024; https://doi.org/10.1002/cbin.12168.
Surya Bansi Singh, Shatruhan Singh Rajput, Shivprasad Patil and Deepa Subramanyam*. Protocol for measuring mechanical properties of live cells using atomic force microscopy. STAR Protocols, 2024 Mar 15; 5(1):102870.
Zoya Mann, Fayth Lim, Suzie Verma, Bageshri N Nanavati, Julie M Davies, Jakob Begun, Edna C Hardeman, Peter W Gunning, Deepa Subramanyam, Alpha S Yap and Kinga Duszyc. Pre-existing tissue mechanical hypertension at adherens junctions disrupts apoptotic extrusion in epithelia. Mol. Biol. of the Cell, 2023; 35(1). Published online Dec 14, 2023.
Nikita Mehta, Vedika Inamdar, Arathy Puthillam, Shivani Chunekar, Hansika Kapoor, Anirudh Tagat and Deepa Subramanyam*. Assessing the impact of COVID-19 on STEM (science, technology, engineering, mathematics) researchers in India. [version 2; peer review: 2 approved]. Wellcome Open Res 2023, 7:157 (https://doi.org/10.12688/wellcomeopenres.17853.2)
Deepika Puri, Aparna Kelkar, Bhaskar Gauri Shankar and Deepa Subramanyam*. Autophagy-cell death balance is maintained by Polycomb-mediated regulation during stem cell differentiation. FEBS J.; 2023, 290(6):1625-1644.
Sinjini Bhattacharyya, Ridim D. Mote, Jacob W. Freimer, Surya Bansi Singh, Sandhya Arumugam, Yadavalli V. Narayana, Raghav Rajan and Deepa Subramanyam*. Cell–cell adhesions in embryonic stem cells regulate the stability and transcriptional activity of β-catenin. FEBS Lett.; 2022, https://doi.org/10.1002/1873-3468.14341
Jyoti Das, Mahak Tiwari and Deepa Subramanyam*. Clathrin light chains – not to be taken so lightly. Front. Cell Dev. Biol., 14 December 2021 https://doi.org/10.3389/fcell.2021.774587
Ridim D. Mote, Laxmikant Shinde V, Surya Bansi Singh, Mahak Tiwari, Hemant, Juhi Srivastava, Vidisha Tripathi, Vasudevan Seshadri, Amitabha Majumdar and Deepa Subramanyam*. A cost-effective and efficient approach for generating and assembling reagents for conducting real-time PCR. 2021, J. Biosciences, 46:109
Shalmali Bivalkar-Mehla, Deepika Puri, Surya Bansi Singh and Deepa Subramanyam*. Understanding the role of Beclin1 in mouse embryonic stem cell differentiation through CRISPR-Cas9-mediated gene editing. J. Biosciences; 2021; 46:18.
Ridim D Mote, Jyoti Yadav, Surya Bansi Singh, Mahak Tiwari, Laxmikant Shinde V, Shivprasad Patil and Deepa Subramanyam*. Pluripotency of embryonic stem cells lacking clathrin mediated endocytosis cannot be rescued by restoring cellular stiffness. J. Biol. Chem. 2020; 295(49): 16888-16896.
Deepika Puri* and Deepa Subramanyam*. Stress – (self) eating: Epigenetic regulation of autophagy in response to psychological stress. The FEBS Journal. 2019; doi: 10.1111/febs.14826.
Yadavalli V Narayana, Chetan Gadgil, Ridim D. Mote, Raghav Rajan and Deepa Subramanyam*. Clathrin-mediated endocytosis regulates a balance between opposing signals to maintain the pluripotent state of embryonic stem cells. Stem Cell Reports. 2019; 12(1): 152-164.
Sonam Kumari, Apurv Solanki, Saptarshi Mandal, Deepa Subramanyam and Prolay Das. Creation of Linear Carbon dot array with improved optical properties through controlled covalent conjugation with DNA. Bioconjugate Chemistry. 2018; 29(5): 1500-1504.
Sarita Kumari, Steven Vermeulen, Ben van der Veer, Aurelie Carlier, Jan de Boer and Deepa Subramanyam*. Shaping cell fate: influence of topographical substratum properties on embryonic stem cells. Tissue Engineering Part B. 2018; doi: 10.1089/ten.TEB.2017.0468.
Ridim D. Mote, Gaurang Mahajan, Anup Padmanabhan, Ramaraju Ambati and Deepa Subramanyam*. Dual repression of endocytic players by ESCC microRNAs and the Polycomb complex regulates mouse embryonic stem cell pluripotency. Scientific Reports. 2017; 7(1): 17572.
Nayoung Suh, Deepa Subramanyam and Mi-Young Lee. Molecular signatures of secretomes from mesenchymal stem cells: therapeutic benefits. Molecular and Cellular Toxicology. 2017; 13(2): 133-141.
Rajesh Kumar Manne, Yashika Agrawal, Anil Bargale, Asha Patel, Debasish Paul, Neha Anilkumar Gupta, Srikanth Rapole, Vasudevan Seshadri, Deepa Subramanyam, Praveenkumar Shetty, and Manas Santra. A microRNA/Ubiquitin Ligase feedback loop regulates Slug-mediated invasion in breast cancer. Neoplasia. 2017; 19(6): 483-495.
Surya Bansi Singh and Deepa Subramanyam*. CRISPR/ Cas9: A toolbox with clinical potential. Int J of Cell Science and Mol Bio. 2016, 1(1) : 555554.
Nam D Tran, Michael Kissner, Deepa Subramanyam, Ron J Parchem, Diana J Laird, Robert H Blelloch. A miR-372/let-7 Axis Regulates Human Germ versus Somatic Cell Fates. Stem Cells. 2016; 34(7): 1985-91. 24.Deepa Subramanyam*. Cellular reprogramming – Turning the clock back. Resonance, June 2013; 514-521.
Yangming Wang, Collin Melton, Ya-Pu Li, Archana Shenoy, Xin-Xin Zhang, Deepa Subramanyam and Robert Blelloch. MiR-294/miR-302 family promotes proliferation, suppresses the G1-S restriction point, and inhibits embryonic stem cell differentiation through separable mechanisms. Cell Reports, 2013; 4(1): 99-109.
Samy Lamouille, Deepa Subramanyam, Rik Derynck and Robert Blelloch. Regulation of epithelial–mesenchymal and mesenchymal–epithelial transitions by microRNAs. Current Opinion in Cell Biology, 2013; 25(2) : 200-7.
Devanand S. Manoli, Deepa Subramanyam, Catriona Carey, Julie A. Van Westerhuyzen, Karen L. Bales, Robert Blelloch and Nirao M. Shah. Generation of induced pluripotent stem cells from the Prairie vole. PLoS One, 2012; 7(5):e38119.
Deepa Subramanyam, Samy Lamouille, Robert L. Judson, Jason Y. Liu, Nathan Bucay, Rik Derynck and Robert Blelloch. Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells. Nature Biotechnology, 2011 May;29(5):443-8.
Deepa Subramanyam and Robert Blelloch. From microRNAs to targets: pathway discovery in cell fate transitions. Review. Current Opinion in Genetics and Development, 2011 Aug; 21(4):498-503.
Jeevisha Bajaj, Tessy T. Maliekal, Eric Vivien, Chitra Pattabiraman, Sweta Srivastava, H. Krishnamurthy, G. V. Giri, Deepa Subramanyam and Sudhir Krishna. Notch signaling in CD66+ cells drives the progression of human cervical cancers. Cancer Research, 2011; 71 (14), 4888-4897.
Hamed Al-Hussaini, Deepa Subramanyam, Michael Reedijk and Srikala Sridhar. Notch Signaling Pathway as a Therapeutic Target in Breast Cancer. Molecular Cancer Therapeutics, 2011 Jan;10(1):9-15.
Deepa Subramanyam, Cassandra D. Belair, Keegan Q. Barry-Holson, Haijiang Lin, Scott C. Kogan, Emmanuelle Passegué, and Robert Blelloch. PML-RARα and Dnmt3a1 cooperate in vivo to promote acute promyelocytic leukemia. Cancer Research, 2010; Nov 1;70(21):8792-801.
Suruchi Mittal, Deepa Subramanyam, Devaveena Dey, Rekha V Kumar and Annapoorni Rangarajan. Cooperation of Notch and Ras/MAPK signaling pathways in human breast carcinogenesis. Molecular Cancer, 2009 Dec 23;8(1):128.
Deepa Subramanyam and Robert Blelloch. Watching reprogramming in real time. Nature Biotechnology, 2009, Nov;27(11):997-8.
Tessy T. Maliekal, Jeevisha Bajaj, V. Giri, Deepa Subramanyam, Sudhir Krishna.The role of Notch signaling in human cervical cancer: implications for solid tumors. Oncogene, 2008 Sep 1;27(38):5110-4.
Deepa Subramanyam* and Sudhir Krishna. c-Myc substitutes for Notch1-CBF1 functions in cooperative transformation with papillomavirus oncogenes. Virology, 2006 Mar 30;347(1):191-8. 37.Deepa Subramanyam*. Asymmetry Pins Inscuteable. Current Science, 2000 August 10; 79(3): 271-3.